Abstract
Membrane dynamics in the presynaptic region of the neuron is a key process of neuronal signal transduction. Dynamin plays a central part during endocytosis participating in the deformation of membrane structure and constriction. During the study of molecular interaction of presynaptic proteins, we found that dynamin fraction prepared from brain extract contains several lipid components. Fractionation of lipids with thin layer chromatography and mass-analysis showed the presence of phosphatidylcholine, phosphatidylethanolamine, cerebroside, cholesterol and its-derivatives, and triacylglycerol. Since the GTPase activity of bacterially expressed dynamin was activated by the extracted lipid fraction, lipid components that affect the GTPase activity of dynamin was screened and cerebroside, hydroxycholesterols, cholesterol, and triacylglycerol were found to activate the GTPase activity. This result not only suggests the possibility that several neutral lipids participate in the membrane dynamics, but also revealed the possibility that a protein fraction contains lipid components even if its purity was confirmed with SDS-PAGE.
Author Contributions
Copyright© 2018
Ueno Satoko, et al.
License
This work is licensed under a Creative Commons Attribution 4.0 International License.
This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Competing interests The authors have declared that no competing interests exist.
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Introduction
The exocytosis of neurotransmitters and the endocytosis of the membrane of the synaptic vesicles are performed at the presynaptic region of the nervous system. Proteins that participate in these membrane dynamics are hence considered to be enriched in this region. In fact, various proteins in the presynaptic region were found to have specific roles in this process NAP-22 (also called CAP-23 or BASP1) is a presynaptic protein enriched in the presynaptic membrane and synaptic vesicles, and one of the main proteins of the detergent-resistant low-density fraction (DRM) of neurons In a previous study, we identified another NAP-22-interaction protein, dynamin, in the affinity screening of the crude extract of rat brain Since dynamin is also a membrane binding protein, we attempted to detect lipid components in the dynamin fraction prepared from rat brain and found the presence of some lipid molecules. Since this lipid fraction enhanced the GTPase activity of dynamin, we analyzed the lipid species with thin layer chromatography (TLC) and liquid chromatography and mass spectrometry (LC-MS) analysis and found that cholesterol, hydroxycholesterols, cerebroside and triacylglycerol activate the GTPase activity of dynamin.
Materials And Methods
All experimental protocols were performed in accordance with the guidelines for animal research of the Physiological Society of Japan and this study was approved by the Institutional Animal Care and Use Committee (Permission number; 26-10-02) and carried out according to the Kobe-University Animal Experimentation Regulations. All biochemical procedures were performed at 0~4℃ unless otherwise described. Commercially available lipids and lipid-derivatives were obtained as follows. 7α-hydroxycholesterol (7OHC) was obtained from abcam plc. 27-hydroxycholesterol (27OHC) was from Avanti Polar Lipids, Inc. 24(S)-hydroxycholesterol (24OHC) was obtained from Focus Biomolecules. Triacylglycerol (TG)(1,3-palmitin-2-myristin) was from Larodan AB (Sweden). Cholesterol (CHL) (chicken egg), phosphatidylcholine (PC) (porcine brain) and phosphatidylethanolamine (PE) (porcine brain) were obtained from Nacalai Tesc (Japan). These lipids were dissolved in chloroform/methanol (2:1) solution and dried under the stream of N2 gas and suspended with sonication in the buffer in case of the GTPase activity Dynamin of brain (B-dynamin) was purified from rat brain using affinity chromatography of amphiphysin II-SH3 domain as described Purified B-dynamin fraction through amphiphysin II SH3-domain was lyophilized after dialysis to 20 mM ammonium acetate solution. Lipids were then extracted twice with chloroform/methanol (2:1) solution and dried through vacuum evaporation. After TLC development using chloroform: methanol: H2O (65:35:4 or 65:15:4) (v: v: v), lipid containing silica gel was scraped and lipids were extracted as above. Some of these lipids and whole lipid extract were further analyzed with LC (Agilent 1100 series using Acclaim 120 (ThermoFisher Scientific C18 column)) and Q Exactive MS (ThermoFisher Scientific). The system was used as LC-MS for identification of cholesterol and hydroxycholesterols or as LC-MS/MS for lipid identification for other lipids. LC-MS/MS data were analyzed by LipidSerach® (Mitsui Knowledge Industry, Japan). Data are presented as mean±SD (n=4). Student s Bacterial expression and purification of dynamin (E-dynamin) was done as described
Results
In a previous study, we found that NAP-22 fraction, prepared from the detergent-resistant low-density fraction of rat brain, contains several lipid components including gangliosides and the interaction of NAP-22 and calcineurin was regulated by these lipids The developing buffer of TLC was changed slightly, for the reduction of methanol content was found to reduce the mobility of lipids and hence was useful to separate high hydrophobic lipids. Under this condition, the band 6 in In order to confirm the presence of OHCs in the lipid fraction, LC-MS analysis was attempted using commercially available three OHCs (A), the lipid fraction (B), and a mixture of the lipid fraction and OHCs (C) ( In order to know the biological role of these lipids, the effect on the dynamin GTPase was studied and the lipid fraction was found to activate of the GTPase activity of dynamin (
order
Class
Area
Class
Area
Class
Area
Class
Area
Class
Area
Class
Area
1
PC
1.05E+11
PE
8.78E+09
CerG1
7.62E+09
CerG1
2.69E+10
PC
2.23E+09
TG
1.80E+09
2
PC
9.49E+10
PE
8.78E+09
CerG1
3.17E+09
PC
3.47E+09
TG
2.04E+09
TG
1.80E+09
3
PC
6.10E+10
PE
8.30E+09
CerG1
2.69E+09
TG
2.12E+09
TG
1.90E+09
Cer
1.72E+09
4
PC
2.50E+10
PE
6.51E+09
PC
2.66E+09
TG
1.79E+09
PC
1.79E+09
TG
1.71E+09
5
PC
1.84E+10
PE
6.01E+09
CerG1
1.92E+09
TG
1.79E+09
TG
1.64E+09
TG
1.45E+09
6
PC
1.44E+10
PE
5.75E+09
TG
1.88E+09
TG
1.56E+09
TG
1.55E;09
TG
1.23E+09
7
PC
1.29E+10
PE
5.49E+09
TG
1.61E+09
TG
1.42E+09
PC
1.43E+09
TG
1.17E+09
8
PC
1.03E+10
PE
4.72E+09
TG
1.44E+09
TG
1.37E+09
TG
1.40E+09
TG
1.16E+09
9
PS
9.83E+09
PC
4.53E+09
TG
1.36E+09
PC
1.37E+09
TG
1.19E+09
TG
1.13E+09
10
PC
7.77E+09
PC
4.39E+09
PC
1.35E+09
CerG1
1.11E+09
TG
1.15E;09
TG
1.07E+09
Discussion
In this study, we showed the presence of several lipid species in the dynamin fraction prepared from rat brain. Since no lipid was recovered in the binding fraction of amphiphysin II-SH3 domain after the heat treatment of the dynamin fraction in boiling water for 5 min and centrifugation at 20,000 xg, for 30min, at 4℃ to remove the aggregated protein (data not shown), these lipids were considered to be associated with dynamin. Since the dynamin fraction prepared using a Ca2+-dependent binding to the membrane fraction and through an affinity purification is of fairy high purity ( Identification of lipid species was done using TLC and LC-MS/MS, and the presence of PC, PE, cerebroside, and TG was shown. In order to screen the presence of some OHCs, three OHCs were selected for the internal standard of LC-MS. 24OHC is the major brain CHL metabolites produced exclusively in neurons and eliminates CHL from neurons Although the molecular components of this lipid fraction have not been fully identified, absence of sphingomyelin and phosphatidylserine in the fraction ( Recent studies disclosed another role of dynamin in the actin bundling through co-working with cortactin The purity of a protein fraction is usually analyzed with SDS-PAGE. In this case, we showed the presence of several lipid components in a purified dynamin fraction from rat brain. Multiple regulations of protein functions through post translational modifications are well recognized. Studies on the participation of lipid components in protein functions will be interesting issues. DRM - detergent-resistant low-density fraction TCL - thin layer chromatography LC-MS - liquid chromatography and mass spectrometry 7OHC - 7α-hydroxycholesterol, 27OHC - 27-hydroxycholesterol, 24OHC - 24(S)-hydroxycholesterol TG - triacylglycerol CHL - cholesterol PC - phosphatidylcholine PE - phosphatidylethanolamine PMSF - phenylmethysulfonyl fluoride OHCs - hydroxycholesterols