Submitting to a Special Issue

Special issues focus on targeted themes within proteomics and genomics. Authors should confirm that their manuscript aligns with the specific call for papers and addresses the issue scope.

Special issue submissions follow the same peer review standards as regular submissions and are evaluated for methodological rigor and relevance.

Before You Submit

• Review the special issue scope and target topics
• Prepare data availability statements and repository links
• Ensure methods and analytical pipelines are transparent
• Confirm ethical approvals and consent where applicable

How to Submit

Submit your manuscript through ManuscriptZone and select the relevant special issue during the submission process. Provide a brief cover letter that explains scope fit and contribution to the theme.

• Register or log in at https://oap.manuscriptzone.net
• Select the special issue from the dropdown list
• Upload manuscript, figures, and supplementary files
• Include data repository accession numbers
• Submit and track progress via your dashboard

Scope Fit Checklist

• Theme alignment explained in the cover letter
• Clear proteomics or genomics contribution
• Data deposited in appropriate repositories
• Methods and analysis are reproducible

Data Readiness for Special Issues

Special issues often emphasize data comparability and reuse. Ensure datasets are curated, properly annotated, and linked to repository records before submission.

Include accession numbers in the manuscript and confirm that files are accessible to reviewers.

Review and Decision Process

Special issue submissions undergo single blind peer review. Guest editors advise on scope and relevance while final decisions remain with the JPGR editorial leadership.

We encourage authors to respond to reviewer comments clearly and provide point by point revisions.

After Acceptance

Accepted manuscripts proceed to production, including copyediting, proof review, and DOI registration. APCs are applied after acceptance and before final publication.

Timely proof corrections help keep the special issue on schedule.

Revision Checklist

• Point by point response to reviewer comments
• Revised manuscript with tracked changes or highlights
• Updated data availability statement if needed
• Revised figures or tables reflecting requested changes

Author Support

The editorial office can clarify scope fit, data requirements, or repository guidance before submission. Early communication helps keep special issue timelines on track.

Timeline Expectations

Special issues often have coordinated deadlines. Submit early so review and revision can align with the publication window.

If you anticipate delays in data deposition or approvals, notify the editorial office promptly.

Early communication helps keep the issue schedule aligned across all submissions.

Guest Editor Communication

If guest editors provide theme guidance, follow their instructions for scope alignment and data reporting. Clear communication prevents delays and keeps the collection consistent.

Use the cover letter to note any special issue specific considerations or timeline constraints.

Align your submission timeline with guest editor milestones when possible.

Special Issue Submission FAQ

JPGR Commitment

JPGR is committed to rigorous, transparent publishing in proteomics and genomics. We emphasize reproducible methods, complete data statements, and ethical compliance across all article types.

The editorial office supports authors, editors, and reviewers with clear guidance and responsive communication. For questions about scope or workflow, contact [email protected].

We encourage continuous improvement in reporting practices and share updates that help the community maintain high standards in molecular publishing.